This takes some search term to match some gene names, and then retrieves the intensities of these gene for a specified Measurement. Formats as html.
php run.php -file=../../sequences/listATableWithAttributesPHPed.xml -display=last -profile="The mouse microarray experiment" -TableName=Measurement
,
createElement("result");
$rootDom = $domNew->appendChild($root);
foreach ($input->firstChild->childNodes as $enumerate)
{
if ($enumerate->nodeType == 1)
{
$enumerateName = $enumerate->getAttribute("Name");
$h3 = $domNew->createElement("h3");
$h3Dom = $rootDom->appendChild($h3);
$text = $domNew->createTextNode($enumerateName);
$text = $h3Dom->appendChild($text);
$table = $domNew->createElement("table");
$tableDom = $rootDom->appendChild($table);
$columnsDone = false;
foreach ($enumerate->childNodes as $enumeration)
{
//print "\t" . $enumeration->nodeName;
if ($enumeration->nodeType == 1)
{
if ($columnsDone != true)
{
$tr = $domNew->createElement("tr");
$trDom = $tableDom->appendChild($tr);
foreach ($enumeration->childNodes as $attribute)
{
if ($attribute->nodeType == 1)
{
$attributeName = $attribute->getAttribute("Name");
//print $attributeName . "\t";
$td = $domNew->createElement("td");
$tdDom = $trDom->appendChild($td);
$text = $domNew->createTextNode($attributeName);
$text = $tdDom->appendChild($text);
}
}
$columnsDone = true;
}
//print "\n";
$tr = $domNew->createElement("tr");
$trDom = $tableDom->appendChild($tr);
foreach ($enumeration->childNodes as $attribute)
{
if ($attribute->nodeType == 1)
{
//print $attribute->nodeValue . "\t";
$attributeValue = $attribute->nodeValue;
$td = $domNew->createElement("td");
$tdDom = $trDom->appendChild($td);
$text = $domNew->createTextNode($attributeValue);
$text = $tdDom->appendChild($text);
}
}
}
}
}
//print "\n\n";
}
$output = $domNew;
//die();
]]>
search
enumerate
Feature,Reporter,Gene
Query results
Genes found
Expression Values